Imprinted Gene Databases

Imprinted Genes: by Species

Below are listings of genes by species, sorted by chromosomal location. Gene information has been gathered from NCBI, and some genes lack chromosomal coordinates; these are designated with ---. To switch species, select the appropriate tab. To view more information about a gene, click on its name. If there is a gene missing that you feel should be included in the catalog, please contact us.

Only display genes with imprint status:
Gene Aliases Location Status Expressed Allele
Znf597   16 AS  Not Imprinted Biallelic
Zdbf2 4930431J08Rik, 9330107J05Rik, RP23-434D24.2  1  Imprinted Paternal
Adam23 MDC3  1 32.31 cM  Imprinted Paternal
Mcts2 PSIMCT-1, RP23-35I8.12, 2400002F11Rik  2  Imprinted Paternal
Mir296 Mirn296, mmu-mir-296  2 AS  Imprinted Paternal
Mir298 Mirn298, mmu-mir-298  2 AS  Imprinted Paternal
Sfmbt2 D2Wsu23e, D330030P06Rik  2 6.0 cM  Imprinted Paternal
Wt1 Wt-1, D630046I19Rik  2 58.0 cM  Tissue Dependent Maternal
Gatm AT, AI314789, 1810003P21Rik  2 69.0 cM AS  Imprinted Maternal
H13 Spp, H-13, Hm13, PSL3, 1200006O09Rik, 4930443L17Rik, 5031424B04Rik  2 75.41 cM  Imprinted Maternal
Blcap Bc10, AI462828, MGC102074  2 88.0 cM AS  Imprinted Isoform Dependent
Nnat Peg5, AW107673, 5730414I02Rik  2 88.0 cM  Imprinted Paternal
Zfp64 Gm38422  2 88.99 cM AS  Imprinted Paternal
Gnas P1, P2, P3, GSP, Gsa, POH, GPSA, Nesp, Gnas1, Nespl, PHP1A, PHP1B, Gnasxl, Nesp55, Oedsml, Oed-Sml, Gs-alpha, XLalphas, MGC118029, 5530400H20Rik, A930027G11Rik, C130027O20Rik  2 104.0 cM  Imprinted Isoform Dependent
Nespas Gnas-as  2 104.0 cM AS  Imprinted Paternal
L3mbtl L3MBTL1, KIAA0681, mKIAA0681, C630004G01  2 H2  Not Imprinted Biallelic
Jade1 Phf1, Phf17, AU041499, mKIAA1807, D530048A03Rik  3  Imprinted Paternal
Ngfb   3 48.5 cM  Predicted Paternal
Gnai3 Gnai-3, AI158965, AW537698  3 48.8 cM AS  Predicted Maternal
Trp73 p73, TP73  4 82.0 cM AS  Unknown Unknown
Magi2 AIP-1, Acvri1, Magi-2, S-SCAM, Acvrip1, Acvrinp1, mKIAA0705  5  Imprinted Paternal
Fkbp6 36kDa, FKBP-6, FKBP-36, AU017274, D5Ertd724, D5Ertd724e, 1700008G22Rik  5 75.11 cM AS  Imprinted Paternal
Mkrn1-ps1 makorin, ring finger protein 1, pseudogene 1  5 E1 AS  Conflicting Data Paternal
Peg10 Edr, HB-1, Mar2, MEF3L, Mart2, MyEF-3, AA407948  6 0.5 cM  Imprinted Paternal
Pon1 Pon  6 0.5 cM AS  Not Imprinted Biallelic
Pon3 AI786302, 2810004E20  6 0.5 cM AS  Imprinted Maternal
Ppp1r9a BB181831, mKIAA1222, 5330407E15, neurabin-I, 2810430P21Rik, 4930518N04Rik, A230094E16Rik  6 0.5 cM  Imprinted Maternal
Tfpi2 AV000670, PP5/TFPI-2  6 1.0 cM AS  Imprinted Maternal
Sgce e-SG  6 1.0 cM AS  Imprinted Paternal
Gng11 Hg3h1, 0610037B21Rik  6 1.81 cM  Not Imprinted Biallelic
Asb4 AV117194, AW060255, 8430401O13Rik  6 1.99 cM  Imprinted Maternal
Dlx5 AI385752  6 2.0 cM AS  Not Imprinted Biallelic
Calcr Clr  6 3.8 cM AS  Imprinted Maternal
Mest Peg1, AA408879, AI256745  6 7.5 cM  Imprinted Paternal
Mir335 Mirn335, mir-335, mmu-mir-335  6 12.53 cM  Imprinted Maternal
Aqp1 CHIP, CHIP28  6 27.38 cM  Imprinted Maternal
Pon2 AI481612, MGC68232, 6330405I24Rik  6 A1 AS  Imprinted Maternal
Cpa4 AV009555, 1110019K20Rik  6 A3.3  Unknown Unknown
Copg2 AW227625  6 A3.3 AS  Imprinted Maternal
Klf14 BTEB5, AL022736, 5330411L03Rik  6 A3.3 AS  Imprinted Maternal
Nap1l5 1110020M21Rik  6 C1 AS  Imprinted Paternal
Ano1 Tmem16a  7 AS  Imprinted Maternal
Nlrp2 N, P, Nb, PYP, NBS1, PAN1, Nalp2, PYPAF2, E330007A02Rik  7 AS  Imprinted Maternal
AF313042 Msuit1  7  Imprinted Maternal
Peg3os Apeg3, Peg3as  7 3.89 cM  Imprinted Paternal
Usp29 Ocat  7 6.5 cM  Imprinted Paternal
Peg3 Pw1, End4, Gcap4, Zfp102, AL022617, mKIAA0287  7 6.5 cM AS  Imprinted Paternal
Zim1   7 6.5 cM AS  Imprinted Maternal
Zfp264   7 7.0 cM  Imprinted Paternal
Zim3 1700128I23Rik  7 7.0 cM  Imprinted Maternal
Tgfb1 Tgfb, Tgfb-1, TGFbeta1, TGF-beta1  7 13.98 cM  Not Imprinted Maternal
Axl Ark, Ufo, Tyro7  7 14.02 cM AS  Imprinted Maternal
Peg12 Frat3  7 28.0 cM AS  Imprinted Paternal
Magel2 ns7, nM15, NDNL1, Mage-l2  7 28.0 cM  Imprinted Paternal
Ndn Peg6, AI528698  7 28.0 cM  Imprinted Paternal
Gabrg3 Gabrg-3  7 28.2 cM AS  Unknown Unknown
Gabra5 A230018I05Rik  7 28.5 cM AS  Unknown Unknown
Gabrb3 Cp1, Gabrb-3, AW049585, A230092K12Rik  7 28.6 cM  Unknown Unknown
Ube3a Hpve6a, KIAA4216, mKIAA4216, 4732496B02, 5830462N02Rik, A130086L21Rik  7 28.65 cM  Imprinted Maternal
Mkrn3 Zfp127, D7H15S9-1  7 29.0 cM AS  Imprinted Paternal
Snrpn SMN, Peg4, HCERN3, MGC18604, MGC30325, 2410045I01Rik  7 29.0 cM AS  Imprinted Paternal
Pwcr1 snoRNA MBII-85  7 29.0 cM AS  Imprinted Paternal
Zfp127as ZNF127AS  7 29.0 cM  Imprinted Maternal
Ampd3   7 57.85 cM  Imprinted Maternal
Tspan32 Art-1, Phemx, Tssc6, AW208513, BB235973, D7Wsu37e  7 69.0 cM  Not Imprinted Biallelic
H19 AI747191  7 69.03 cM AS  Imprinted Maternal
Igf2as   7 69.09 cM  Imprinted Paternal
Ins2 Mody, Ins-2, Mody4, AA986540, proinsulin, INS  7 69.1 cM AS  Imprinted Paternal
Kcnq1 Kcna9, KVLQT1, AW559127  7 69.3 cM  Imprinted Maternal
Ascl2 Mash2, 2410083I15Rik  7 69.3 cM AS  Imprinted Maternal
Tssc4 AA241958, ESTM671070  7 69.3 cM  Imprinted Maternal
Cd81 Tapa1, Tapa-1, Tspan28  7 69.3 cM  Imprinted Maternal
Kcnq1ot1 Lit1, Kvlqt1-as, antisense transcript of Kvlqt1  7 69.3 cM  Imprinted Paternal
Phlda2 Ipl, Tssc3  7 69.5 cM AS  Imprinted Maternal
Slc22a18 HET, ITM, BWR1A, Impt1, TSSC5, Orctl2, BWSCR1A, AW260131, Slc22a1l, p45-BWR1A  7 69.5 cM  Imprinted Maternal
Cdkn1c CDKI, Kip2, p57Kip2, AL024410, p57(kip2)  7 69.49 cM AS  Imprinted Maternal
Nap1l4 Nap2, AI316776, D7Wsu30e, 2810410H14Rik  7 69.55 cM AS  Imprinted Maternal
Tnfrsf23 mSOB, Tnfrh1, Dctrailr1, MGC123882, MGC123883, Tnfrsf1al1, mDcTrailr1  7 69.56 cM AS  Imprinted Maternal
Tnfrsf22 SOBa, Tnfrh2, Tnfrsf1al2, mDcTrailr2, 2810028K06Rik, C130035G06Rik  7 69.57 cM AS  Imprinted Maternal
Tnfrsf26 Tnfrh3, Tnfrsf24  7 69.58 cM AS  Imprinted Maternal
Osbpl5 ORP5, Obph1, Osbp2, AI462538, 1110006M06Rik  7 69.59 cM AS  Conflicting Data Unknown
Inpp5f SAC2, cI-27, hSAC2, mKIAA0966, 5830435P03Rik  7 70.32 cM  Imprinted Paternal
Nctc1 Rhit1, 9530074L01  7 87.96 cM AS  Imprinted Paternal
Mir675 Mirn675, mir-675, mmu-mir-675  7 87.97 cM AS  Imprinted Maternal
Igf2 M, M6, Igf, Mpr, Peg, Igf-, M6pr, Peg2, Igf-2, Igf-II, AL033362  7 87.99 cM AS  Imprinted Paternal
Th   7 88.06 cM AS  Imprinted Maternal
Dhcr7   7 88.33 cM  Imprinted Maternal
Zim2 1700116N21Rik  7 A1 AS  Imprinted Maternal
Atp10a pfatp, Atp10c  7 B5  Conflicting Data Maternal
Snurf Snrpn, MGC18604, MGC30325, 2410045I01Rik  7 B5 AS  Imprinted Paternal
Trpm5 Mtr1, Ltrpc5, 9430099A16Rik  7 F5 AS  Not Imprinted Biallelic
Gab1 AA408973, AW107238  8 AS  Imprinted Paternal
Sall1 Msal-3  8 43.51 cM AS  Imprinted Paternal
Cdh15 Mca, Mcad, Cdh14, AI323380  8 71.99 cM  Imprinted Paternal
Zc3h12c mKIAA1726, A230108E06, C230027N18Rik  9 AS  Not Imprinted Biallelic
Snx14 YR-14, B830022K16, C330035N22Rik  9 AS  Imprinted Paternal
Mir184 Mirn184, mir-184, mmu-mir-184  9 47.25 cM AS  Imprinted Paternal
Rasgrf1 Grf, Gnrp, Grf1, p190, CDC25, Grfbe, P190-A, CDC25Mm, Grfbeta, AI844718, Ras-GRF1, p190RhoGEF  9 47.31 cM  Imprinted Paternal
Sdhd C78570, AVLL5809, PRO19626, 3110001M13Rik  9 B AS  Unknown Unknown
Lin28b Lin-28.2, 2810403D23Rik, D030047M17Rik  10 AS  Not Imprinted Biallelic
Hymai   10  Imprinted Paternal
Plagl1 Lot1, Zac1  10 15.0 cM  Imprinted Paternal
Dcn DC, SL, PG40, PGII, PGS2, DSPG2, SLRR1B  10 50.27 cM  Imprinted Maternal
Ctnna3 Vr22, Catna3, 4933408A16  10 B4-B5.1  Unknown Unknown
Platr20 5133400J02Rik  11 AS  Imprinted Paternal
Ddc Aadc  11 7.0 cM AS  Imprinted Paternal
Grb10 Meg1, AI325020, mKIAA0207, 5730571D09Rik  11 8.0 cM AS  Imprinted Isoform Dependent
Commd1 Murr1, U2/Mu, AI256843  11 12.0 cM AS  Imprinted Maternal
U2af1-rs1 SP2, 35kDa, Irlgs2, D11Ncvs75, U2afbp-rs  11 12.0 cM  Imprinted Paternal
Aim1 Aurkb, Aik2, Ark2, AurB, IPL1, Stk5, AIM-1, AIRK2, STK-1, Stk12  11 42.32 cM  Not Imprinted Biallelic
Ccdc40 B930008I02Rik  11 83.35 cM  Imprinted Paternal
Mir337 Mirn337, mmu-mir-337  12  Imprinted Maternal
Mir410 Mirn410, mmu-mir-410  12  Imprinted Maternal
Smoc1 S, SRG, AI848508, 2600002F22Rik  12  Imprinted Paternal
Mir380 Mirn380, mmu-mir-380  12  Imprinted Maternal
AF357355 MBII-343  12  Imprinted Maternal
AF357359 MBII-426  12  Imprinted Maternal
Mir127 Mirn127, mmu-mir-127  12  Imprinted Maternal
Mir136 Mirn136, mmu-mir-136  12  Imprinted Maternal
B830012L14Rik   12  Imprinted Maternal
Mir411 Mirn411, mmu-mir-411  12  Imprinted Maternal
Mir376b Mirn376b  12  Imprinted Maternal
Mir431 Mirn431, mmu-mir-431  12  Imprinted Maternal
Dlk1 FA1, ZOG, pG2, Peg9, SCP1, Ly107, pref-1, AW742678  12 54.0 cM  Imprinted Paternal
Gtl2 Meg3, R74756, R75394, AI425946, AW108224, D12Bwg1266e, 2900016C05Rik, 3110050O07Rik, 6330408G06Rik  12 54.0 cM  Imprinted Maternal
AF357341 MBII-19  12 54.5 cM  Imprinted Maternal
AF357425 MBII-48  12 54.5 cM  Imprinted Maternal
AF357426 MBII-49  12 54.5 cM  Imprinted Maternal
AF357428 MBII-78  12 54.5 cM  Imprinted Maternal
Rian Meg8, 5530401N18Rik, C130089L09Rik  12 60.41 cM  Imprinted Maternal
Mir370 Mirn370, mir-370, mmu-mir-370  12 60.45 cM  Imprinted Maternal
Dio3 MGC124117, MGC124118  12 F1  Imprinted Paternal
Mirg Meg9, AI852992, 2810474H01Rik  12 F1  Imprinted Maternal
Rtl1 Mar, Mor1, Mart1, 6430411K18Rik  12 F1 AS  Imprinted Paternal
Begain Gm897, BM948371  12 F1 AS  Imprinted Isoform Dependent
Fam50b X5L, D0H6S2654E, XAP-5-like  13 14.18 cM  Not Imprinted Biallelic
Rb1 Rb, pRb, Rb-1  14 41.0 cM AS  Not Imprinted Biallelic
Htr2a Htr2, Htr-2, MGC124301, MGC124302, E030013E04  14 41.5 cM  Imprinted Maternal
Kbtbd6 Gm5465, Zbtbd6, EG432879  14 42.66 cM  Not Imprinted Biallelic
Trappc9 N, Ibp, Nibp, TRS1, TRS130, mKIAA1882, 1810044A24Rik, 2900005P22Rik, 4632408O18Rik  15 AS  Imprinted Maternal
Zfat Gm922, Zfat1, Zfp406  15 AS  Not Imprinted Biallelic
Chrac1 YCL, YCL1, 2410152E03Rik, 2810406L04Rik  15  Imprinted Maternal
Galnt6 GalNA, AW047994, GalNAc-T6, 4632410F13  15 AS  Imprinted Paternal
Peg13   15 AS  Imprinted Paternal
Slc38a4 At, SN, Ata3, SNAT4, mATA3, mNAT3, 1110012E16Rik, 1700012A18Rik  15 AS  Imprinted Paternal
Kcnk9 Task3  15 D3 AS  Imprinted Maternal
Naa60 HAT4, NatF, Nat15, AI315146, 1200013P24Rik  16  Not Imprinted Biallelic
Mir125b2 Mirn125b-2, mir-125b-2  16 44.71 cM  Not Imprinted Biallelic
Dscam 4932410A21Rik  16 57.02 cM AS  Not Imprinted Biallelic
Qpct 5730422A13Rik  17  Imprinted Maternal
Pde10a   17  Imprinted Maternal
Dact2 Dp, Frd, dap, Dpr2, Frd2, dapper2, A630024E20, 2900084M21Rik  17 AS  Imprinted Maternal
Prkn P, Pa, Park2  17 7.8 cM  Imprinted Maternal
Slc22a3 EMT, Oct3, Orct3, Slca22a3  17 7.31 cM AS  Imprinted Maternal
Slc22a2 Oct2, Orct2, MGC18339  17 7.32 cM  Imprinted Maternal
Igf2r CD222, CI-MPR, Mpr300, AI661837, M6P/IGF2R  17 7.35 cM AS  Tissue Dependent Maternal
Air B930018I07Rik  17 7.36 cM  Imprinted Paternal
Thbs2 TS, TSP2, Thbs-, Thbs-2  17 8.95 cM AS  Imprinted Maternal
Smoc2 Smo, Smoc2l, 1700056C05Rik, 5430426J21Rik  17 8.95 cM  Imprinted Maternal
Impact E430016J11Rik  18 A2-B2  Imprinted Paternal
Glis3 E230012L24, 4833409N03Rik, E330013K21Rik  19 AS  Not Imprinted Biallelic
Ins1 Ins-1, Ins2-rs1  19 49.0 cM  Conflicting Data Paternal
Fthl17b Gm5634, EG434726, Fthl17L1  X AS  Imprinted Paternal
Fthl17c Gm14511, EG434727, Fthl17L2  X AS  Imprinted Paternal
Fthl17d Gm14458, Fthl17L3  X AS  Imprinted Paternal
Gm35612   X  Imprinted Maternal
Fthl17e Fthl1, Fthl17  X  Imprinted Paternal
Fthl17f Gm5635, EG434729, Fthl17L5  X  Imprinted Paternal
Rhox5 Pem  X  Imprinted Maternal
Fthl17a AI324104, 1600014K23Rik  X  Imprinted Paternal
Xlr3b Xlr, Xlr3, EG574437  X  Imprinted Maternal
Tsix antisense of Xist  X 42.0 cM  Imprinted Maternal
Jpx Enox, 2010000I03Rik, 2510040I06Rik  X 46.17 cM  Imprinted Paternal
Ftx Thcytx, BB219131, NCRNA00182, B230206F22Rik  X 46.21 cM AS  Imprinted Paternal
Zcchc13 Cnbp2, 4930513O09Rik  X 46.26 cM  Imprinted Maternal
Maged2 ORF1, Mage-d2, 4833439A22Rik  X 68.46 cM AS  Imprinted Maternal
Xist A430022B11  X D AS  Imprinted Paternal