Imprinted Gene Databases

Imprinted Genes: by Imprinting Status

Below are listings of genes by imprinting status, sorted by name. Gene information has been gathered from NCBI, and some genes lack chromosomal coordinates; these are designated with ---. To change status, select the appropriate tab. To view more information about a gene, click on its name. If there is a gene missing that you feel should be included in the catalog, please contact us.

Only display genes from species:
Species Gene Aliases Location Status Expressed Allele
Homo sapiens ABCA1 TGD, ABC1, CERP, ABC-1, HDLDT1, FLJ14958, MGC164864, MGC165011  9:107533282-107700435 AS (9q31.1)  Imprinted
Mus musculus AF313042 Msuit1  --- (7 69.5 cM)  Imprinted Maternal
Homo sapiens ANKRD11 T13, LZ16, ANCO-1  16:89324034-89566968 AS (16q24.3)  Imprinted Maternal
Homo sapiens ATP10A ATPVA, ATPVC, ATP10C, KIAA0566  15:25913858-26118348 AS (15q11.2)  Imprinted Maternal
Mus musculus Air B930018I07Rik  17:12581652-12605350  (17 7.36 cM)  Imprinted Paternal
Mus musculus Asb4 AV117194, AW060255, 8430401O13Rik  6:5323385-5393021  (6 0.6 cM)  Imprinted Maternal
Mus musculus Ascl2 Mash2, 2410083I15Rik  7:142766215-142788616 AS (7 69.3 cM)  Imprinted Maternal
Ovis aries BEGAIN BEGAIN, BEGAIN2B  --- ()  Imprinted Isoform Dependent
Homo sapiens BLCAP BC10  20:36135818-36166302 AS (20q11.2-q12)  Imprinted Isoform Dependent
Mus musculus Begain Gm897, BM948371  12:110260391-110316426 AS (12 F1)  Imprinted Isoform Dependent
Mus musculus Blcap Bc10, AI462828, MGC102074  2:157372097-157402096 AS (2 88.0 cM)  Imprinted Isoform Dependent
Ovis aries CDKN1C CDKN1C  --- ()  Imprinted
Homo sapiens CDKN1C BWS, WBS, p57, BWCR, KIP2  11:2894447-2916994 AS (11p15.5)  Imprinted Maternal
Homo sapiens COPG2IT1 CIT1  --- (7q32)  Imprinted Paternal
Homo sapiens CPA4 CPA3  7:129922973-129974019  (7q32)  Imprinted Maternal
Mus musculus Calcr Clr  6:3625733-3728615 AS (6 3.8 cM)  Imprinted Maternal
Mus musculus Cd81 Tapa1, Tapa-1, Tspan28  7:142852184-142887313  (7 69.3 cM)  Imprinted Maternal
Mus musculus Cdkn1c CDKI, Kip2, p57Kip2, AL024410, p57(kip2)  7:143257729-143280385 AS (7 69.49 cM)  Imprinted Maternal
Mus musculus Commd1 Murr1, U2/Mu, AI256843  11:22789727-22892283 AS (11 12.0 cM)  Imprinted Maternal
Mus musculus Copg2 AW227625  6:30729597-30836920 AS (6 A3.3)  Imprinted Maternal
Homo sapiens DDC AADC  7:50516133-50643153 AS (7p12.2)  Imprinted Isoform Dependent
Ovis aries DIO3 DIO3, 5DIII, DIOIII  --- ()  Imprinted Paternal
Sus scrofa DIRAS3 DIRAS3  --- ()  Imprinted Paternal
Homo sapiens DIRAS3 ARHI, NOEY2  1:68501644-68526459 AS (1p31)  Imprinted Paternal
Homo sapiens DLGAP2 DAP2, SAPAP2  8:1439568-1666641  (8p23)  Imprinted Paternal
Ovis aries DLK1 DLK1  --- (18)  Imprinted Paternal
Homo sapiens DLK1 DLK, FA1, ZOG, pG2, PREF1, Pref-1  14:101183252-101211459  (14q32)  Imprinted Paternal
Sus scrofa DLX5 DLX5  --- ()  Imprinted Maternal
Homo sapiens DLX5   7:96477643-96502078 AS (7q22)  Imprinted Maternal
Mus musculus Dcn DC, PG40, PGII, PGS2, mDcn, DSPG2, SLRR1B  10:96902054-96957838  (10 55.0 cM)  Imprinted Maternal
Mus musculus Ddc Aadc  11:11704105-11800403 AS (11 7.0 cM)  Imprinted Paternal
Mus musculus Dio3 MGC124117, MGC124118  12:110717039-110738901  (12 F1)  Imprinted Paternal
Mus musculus Dlk1 FA1, ZOG, pG2, Peg9, SCP1, Ly107, pref-1, AW742678  12:109891029-109918497  (12 54.0 cM)  Imprinted Paternal
Homo sapiens GNAS AHO, GSA, GSP, POH, GPSA, NESP, GNAS1, PHP1A, PHP1B, C20orf45, MGC33735, dJ309F20.1.1, dJ806M20.3.3  20:57404794-57496249  (20q13.3)  Imprinted Isoform Dependent
Homo sapiens GRB10 RSS, IRBP, MEG1, GRB-IR, Grb-10, KIAA0207  7:50647759-50871158 AS (7p12-p11.2)  Imprinted Isoform Dependent
Mus musculus Gatm AT, AI314789, 1810003P21Rik  2:122275912-122312702 AS (2 69.0 cM)  Imprinted Maternal
Mus musculus Gnas P1, P2, P3, GSP, Gsa, POH, GPSA, Nesp, Gnas1, Nespl, PHP1A, PHP1B, Gnasxl, Nesp55, Oedsml, Oed-Sml, Gs-alpha, XLalphas, MGC118029, 5530400H20Rik, A930027G11Rik, C130027O20Rik  2:173917259-173999682  (2 104.0 cM)  Imprinted Isoform Dependent
Mus musculus Grb10 Meg1, AI325020, mKIAA0207, 5730571D09Rik  11:11820510-11947357 AS (11 8.0 cM)  Imprinted Isoform Dependent
Mus musculus Gtl2 Meg3, R74756, R75394, AI425946, AW108224, D12Bwg1266e, 2900016C05Rik, 3110050O07Rik, 6330408G06Rik  12:109983424-110019518  (12 54.0 cM)  Imprinted Maternal
Mus musculus H19   7:142374921-142397535 AS (7 69.03 cM)  Imprinted Maternal
Homo sapiens H19 ASM, BWS, ASM1, MGC4485, PRO2605, D11S813E  11:1962981-1985640 AS (11p15.5)  Imprinted Maternal
Homo sapiens HYMAI NCRNA00020  6:144314022-144339866 AS (6q24.2)  Imprinted Paternal
Mus musculus Htr2a Htr2, Htr-2, MGC124301, MGC124302, E030013E04  14:73364994-73451013  (14 41.5 cM)  Imprinted Maternal
Bos taurus IGF2 IGF2, MGC140034  29:51247936-51286553  (29qter)  Imprinted Paternal
Homo sapiens IGF2 INSIGF, pp9974, C11orf43, FLJ22066, FLJ44734  11:2140346-2180832 AS (11p15.5)  Imprinted Paternal
Sus scrofa IGF2 IGF2, IGF-II  --- (2p)  Imprinted Paternal
Ovis aries IGF2 IGF2, IGF-II  --- ()  Imprinted Paternal
Homo sapiens IGF2AS PEG8, MGC168198  11:2151736-2179893  (11p15.5)  Imprinted Paternal
Ovis aries IGF2R IGF-IIR, IGF2R  --- ()  Imprinted Maternal
Canis lupus familiaris IGF2R IGF2R  1:52194020-52313631  (1)  Imprinted Maternal
Homo sapiens INPP5F V2 SAC2, hSAC2, MSTP007, MSTPO47, FLJ13081, KIAA0966, MGC59773, MGC131851  10:121465598-121588648  (10q26.11)  Imprinted Paternal
Homo sapiens INS ILPR, IRDN  11:2171008-2192438 AS (11p15.5)  Imprinted Paternal
Mus musculus Igf2 Mpr, M6pr, Peg2, Igf-2, Igf-II, AL033362  7:142450157-142478878 AS (7 69.09 cM)  Imprinted Paternal
Rattus norvegicus Igf2 IGFII, RNIGF2  1:202896623-202925230 AS (1q41)  Imprinted Paternal
Mus musculus Igf2as   --- (7 69.09 cM)  Imprinted Paternal
Mus musculus Igf2r CD222, CI-MPR, Mpr300, AI661837, M6P/IGF2R  17:12515770-12623021 AS (17 7.35 cM)  Imprinted Maternal
Mus musculus Impact E430016J11Rik  18:13105420-13146116  (18 A2-B2)  Imprinted Paternal
Mus musculus Inpp5f SAC2, cI-27, AI115354, AW561896, mKIAA0966, 5830435P03Rik  7:135744878-135849949  (7 F3)  Imprinted
Mus musculus Ins2 Mody, Ins-2, Mody4, AA986540, proinsulin, INS  7:142478050-142499097 AS (7 69.1 cM)  Imprinted Paternal
Homo sapiens KCNK9 KT3.2, TASK3, K2p9.1, TASK-3, MGC138268, MGC138270  8:140614803-140725298 AS (8q24.3)  Imprinted Maternal
Homo sapiens KCNQ1 LQT, RWS, WRS, LQT1, SQT2, ATFB1, ATFB3, JLNS1, KCNA8, KCNA9, Kv1.9, Kv7.1, KVLQT1, FLJ26167  11:2456220-2880339  (11p15.5)  Imprinted Maternal
Homo sapiens KCNQ1DN BWRT, HSA404617  11:2837868-2859910  (11p15.4)  Imprinted Maternal
Homo sapiens KCNQ1OT1 LIT1, KvDMR1, KCNQ10T1, KvLQT1-AS, long QT intronic transcript 1  --- (11p15)  Imprinted Paternal
Homo sapiens KLF14 BTEB5  7:130407477-130428859 AS (7q32.3)  Imprinted Maternal
Mus musculus Kcnk9 Task3  15:72332548-72386708 AS (15 D3)  Imprinted Maternal
Mus musculus Kcnq1 Kcna9, KVLQT1, AW559127  7:142906643-143246431  (7 69.3 cM)  Imprinted Maternal
Mus musculus Kcnq1ot1 Lit1, Kvlqt1-as, antisense transcript of Kvlqt1  7:474882-579156  (7 69.3 cM)  Imprinted Paternal
Mus musculus Klf14 BTEB5, AL022736, 5330411L03Rik  6:30897682-30918981 AS (6 A3.3)  Imprinted Maternal
Homo sapiens L3MBTL L3MBTL1, FLJ41181, KIAA0681, H-L(3)MBT, dJ138B7.3, DKFZp586P1522  20:42133052-42180534  (20q13.12)  Imprinted Paternal
Homo sapiens MAGEL2 nM15, NDNL1  15:23878695-23901174 AS (15q11-q12)  Imprinted Paternal
Sus scrofa MEG3 MEG3, GTL2  --- ()  Imprinted Maternal
Homo sapiens MEG3 GTL2, FP504, prebp1, PRO0518, PRO2160, FLJ31163, FLJ42589  14:100352214-100407118  (14q32)  Imprinted Maternal
Sus scrofa MEST MEST, PEG1  --- ()  Imprinted Paternal
Homo sapiens MEST PEG1, MGC8703, MGC111102, DKFZp686L18234  7:130116045-130156132  (7q32)  Imprinted Paternal
Homo sapiens MESTIT1 PEG1-AS, NCRNA00040  7:130116897-130141012 AS (7q32)  Imprinted Paternal
Homo sapiens MKRN3 D15S9, RNF63, ZFP127, ZNF127, MGC88288  15:23800453-23823166  (15q11-q13)  Imprinted Paternal
Mus musculus Magel2 ns7, nM15, NDNL1, Mage-l2  7:62245928-62270589  (7 28.0 cM)  Imprinted Paternal
Rattus norvegicus Mcts2   3:143028078-143049284  (3q41)  Imprinted
Mus musculus Mest Peg1, AA408879, AI256745  6:30678072-30708466  (6 7.5 cM)  Imprinted Paternal
Mus musculus Mirg Meg9, AI852992, 2810474H01Rik  --- (12 F1)  Imprinted Maternal
Mus musculus Mirn337 mmu-mir-337, mir 337  12:67567230-67587326  ()  Imprinted Maternal
Mus musculus Mkrn1-ps1 makorin, ring finger protein 1, pseudogene 1  5:89902715-89923906 AS (5 E1)  Imprinted Paternal
Mus musculus Mkrn3 Zfp127, D7H15S9-1  7:62286542-62309088 AS (7 29.0 cM)  Imprinted Paternal
Homo sapiens NAP1L5 DRLM  4:89607065-89629022 AS (4q22.1)  Imprinted Paternal
Homo sapiens NDN HsT16328  15:21471646-21493542 AS (15q11.2-q12)  Imprinted Paternal
Sus scrofa NECD NECD, NDN  1:90114001-90134980  ()  Imprinted Paternal
Homo sapiens NNAT Peg5, MGC1439  20:36139606-36162091  (20q11.2-q12)  Imprinted Paternal
Mus musculus Nap1l4 Nap2, AI316776, D7Wsu30e, 2810410H14Rik  7:143312968-143368479 AS (7 69.55 cM)  Imprinted Maternal
Mus musculus Nap1l5 1110020M21Rik  6:58824811-58846642 AS (6 C1)  Imprinted Paternal
Mus musculus Ndn Peg6, AI528698  7:62217297-62238877  (7 28.0 cM)  Imprinted Paternal
Mus musculus Nespas Gnas-as, Sang  2:173914175-173948374 AS (2 104.0 cM)  Imprinted Maternal
Mus musculus Nnat Peg5, AW107673, 5730414I02Rik  2:157375845-157398257  (2 88.0 cM)  Imprinted Paternal
Homo sapiens OSBPL5 ORP5, OBPH1, FLJ42929  11:3098345-3196581 AS (11p15.4)  Imprinted Maternal
Mus musculus Osbpl5 ORP5, Obph1, Osbp2, AI462538, 1110006M06Rik  7:143488151-143561352 AS (7 69.59 cM)  Imprinted Maternal
Homo sapiens PEG10 Edr, HB-1, Mar2, MEF3L, Mart2, RGAG3, KIAA1051  7:94275636-94309006  (7q21)  Imprinted Paternal
Sus scrofa PEG3 PEG3  --- (6q11-q22)  Imprinted Paternal
Homo sapiens PEG3 PW1, ZSCAN24, KIAA0287, DKFZp781A095  19:57313802-57362063 AS (19q13.4)  Imprinted Paternal
Homo sapiens PHLDA2 IPL, BRW1C, BWR1C, HLDA2, TSSC3  11:2939502-2960649 AS (11p15.5)  Imprinted Maternal
Homo sapiens PLAGL1 ZAC, LOT1, ZAC1, MGC126275, MGC126276, DKFZp781P1017  6:144251436-144395734 AS (6q24-q25)  Imprinted Paternal
Sus scrofa PLAGL1 PLAGL1  --- ()  Imprinted Paternal
Sus scrofa PON2 PON2  --- ()  Imprinted Maternal
Homo sapiens PPP1R9A NRB1, NRBI, FLJ20068, KIAA1222, Neurabin-I  7:94526948-94935726  (7q21.3)  Imprinted Maternal
Homo sapiens PWCR1 PET1, non-coding RNA in the Prader-Willi critical region  15:260567-280661  (15q11.2)  Imprinted Paternal
Mus musculus Peg10 Edr, HB-1, Mar2, MEF3L, Mart2, MyEF-3, AA407948  6:4687379-4720475  (6 0.5 cM)  Imprinted Paternal
Mus musculus Peg12 Frat3  7:62330820-62353459 AS (7 28.0 cM)  Imprinted Paternal
Mus musculus Peg13   15:72622855-72647579 AS (15 D3)  Imprinted Paternal
Mus musculus Peg3 Pw1, End4, Gcap4, Zfp102, AL022617, mKIAA0287  7:6300045-6344504 AS (7 6.5 cM)  Imprinted Paternal
Mus musculus Phlda2 Ipl, Tssc3  7:143300937-143321913 AS (7 69.5 cM)  Imprinted Maternal
Mus musculus Plagl1 Lot1, Zac1  10:12771106-12830085  (10 15.0 cM)  Imprinted Paternal
Mus musculus Ppp1r9a BB181831, mKIAA1222, 5330407E15, neurabin-I, 2810430P21Rik, 4930518N04Rik, A230094E16Rik  6:4843319-5125660  (6 0.5 cM)  Imprinted Maternal
Mus musculus Pwcr1 snoRNA MBII-85  7:59533858-59553947 AS (7 29.0 cM)  Imprinted Paternal
Homo sapiens RBP5 CRBP3, CRBPIII, CRBP-III  12:7266279-7291465 AS (12p13.31)  Imprinted Maternal
Mus musculus Rasgrf1 Grf1, p190, CDC25, P190-A, CDC25Mm, Grfbeta, Ras-GRF1, p190RhoGEF  9:89697667-89837693  (9 50.0 cM)  Imprinted Paternal
Mus musculus Rian Meg8, 5530401N18Rik  --- (12 54.5 cM)  Imprinted Maternal
Mus musculus Rtl1 Mar, Mor1, Mart1, 6430411K18Rik  12:110027975-110053209 AS (12 F1)  Imprinted Paternal
Homo sapiens SANG SANG, Nespas  --- (20q13.32)  Imprinted Paternal
Homo sapiens SGCE ESG, DYT11  7:94204535-94295520 AS (7q21-q22)  Imprinted Paternal
Homo sapiens SLC22A18 HET, ITM, BWR1A, IMPT1, TSSC5, ORCTL2, BWSCR1A, SLC22A1L, p45-BWR1A, DKFZp667A184  11:2910950-2956475  (11p15.5)  Imprinted Maternal
Homo sapiens SLC22A2* OCT2, MGC32628  6:160547779-160609948 AS (6q26)  Imprinted Maternal
Homo sapiens SLC22A3* EMT, EMTH, OCT3  6:160679414-160806003  (6q26-q27)  Imprinted Maternal
Sus scrofa SLC38A4 SLC38A4  --- ()  Imprinted Paternal
Homo sapiens SNORD107 HBII-436, HBII-436 C/D box snoRNA  15:22768233-22788307  (15q11.2)  Imprinted Paternal
Homo sapiens SNORD108 HBII-437, HBII-437 C/D box snoRNA  15:22773164-22793232  (15q11.2)  Imprinted Paternal
Homo sapiens SNORD109A HBII-438A, HBII-438A C/D box snoRNA  --- (15q11.2)  Imprinted Paternal
Homo sapiens SNORD109B HBII-438B, HBII-438B C/D box snoRNA  15:23064582-23084648  (15q11.2)  Imprinted Paternal
Homo sapiens SNORD115-48 HBII-52-48  15:25504929-25525004  (15q11.2)  Imprinted Paternal
Homo sapiens SNORD115@ HBII-52  15:25405869-25525004  (15q11.2)  Imprinted Paternal
Homo sapiens SNORD64 HBII-13, HBII-13 snoRNA  15:22771339-22791405  (15q12)  Imprinted Paternal
Homo sapiens SNRPN SMN, PWCR, SM-D, RT-LI, HCERN3, SNRNP-N, FLJ33569, FLJ36996, FLJ39265, MGC29886, SNURF-SNRPN, DKFZp762N022, DKFZp686C0927, DKFZp761I1912, DKFZp686M12165  15:25058793-25674608  (15q11.2)  Imprinted Paternal
Homo sapiens SNURF   15:22741227-22784821  (15q12)  Imprinted Paternal
Mus musculus Sgce e-SG  6:4614349-4707098 AS (6 1.0 cM)  Imprinted Paternal
Mus musculus Slc22a18 HET, ITM, BWR1A, Impt1, TSSC5, Orctl2, BWSCR1A, AW260131, Slc22a1l, p45-BWR1A  7:143273178-143318711  (7 69.5 cM)  Imprinted Maternal
Mus musculus Slc22a2 Oct2, Orct2, MGC18339  17:12417546-12481845  (17 7.32 cM)  Imprinted Maternal
Mus musculus Slc22a3 EMT, Oct3, Orct3, Slca22a3  17:12253329-12361061 AS (17 7.31 cM)  Imprinted Maternal
Mus musculus Slc38a4 Ata3, mATA3, 1110012E16Rik, 1700012A18Rik  15:96812856-96893989 AS (15 F1)  Imprinted Paternal
Mus musculus Snrpn SMN, Peg4, HCERN3, MGC18604, MGC30325, 2410045I01Rik  7:59852063-59894053 AS (7 29.0 cM)  Imprinted Paternal
Mus musculus Snurf Snrpn, MGC18604, MGC30325, 2410045I01Rik  7:59857551-59894073 AS (7 B5)  Imprinted Paternal
Homo sapiens TCEB3C HsT829, TCEB3L2, Elongin A3  18:44544572-44566448 AS (18q21.1)  Imprinted Maternal
Homo sapiens TFPI2 PP5, REF1, TFPI-2, FLJ21164  7:93505744-93530064 AS (7q22)  Imprinted Maternal
Homo sapiens TP73 P73  1:3559128-3660466  (1p36.3)  Imprinted Maternal
Mus musculus Tfpi2 AV000670, PP5/TFPI-2  6:3902594-3928353 AS (6 1.0 cM)  Imprinted Maternal
Mus musculus Tnfrsf23 mSOB, Tnfrh1, Dctrailr1, MGC123882, MGC123883, Tnfrsf1al1, mDcTrailr1  7:143465196-143505261 AS (7 69.56 cM)  Imprinted Maternal
Mus musculus Tsix antisense of Xist  X:99624235-99697675  (X 42.0 cM)  Imprinted Maternal
Mus musculus Tspan32 Art-1, Phemx, Tssc6, AW208513, BB235973, D7Wsu37e  7:142805080-142839033  (7 69.0 cM)  Imprinted Maternal
Mus musculus Tssc4 AA241958, ESTM671070  7:142868757-142890476  (7 69.3 cM)  Imprinted Maternal
Mus musculus U2af1-rs1 SP2, 35kDa, Irlgs2, D11Ncvs75, U2afbp-rs  11:22862036-22884907  (11 12.0 cM)  Imprinted Paternal
Homo sapiens UBE3A AS, ANCR, E6-AP, HPVE6A, EPVE6AP, FLJ26981  15:25572395-25694127 AS (15q11-q13)  Imprinted Maternal
Mus musculus Ube3a Hpve6a, KIAA4216, mKIAA4216, 4732496B02, 5830462N02Rik, A130086L21Rik  7:59086618-59184595  (7 28.65 cM)  Imprinted Maternal
Mus musculus Usp29 Ocat  7:6324668-6581301  (7 6.5 cM)  Imprinted Paternal
Homo sapiens WT1-Alt trans WT1, GUD, WAGR, WT33, WIT-2  11:32355900-32423662 AS (11p13)  Imprinted Paternal
Mus musculus Xist A430022B11  X:99653091-99695951 AS (X D)  Imprinted Paternal
Homo sapiens ZIM2 ZNF656  19:57275919-57362074 AS (19q13.4)  Imprinted Paternal
Homo sapiens ZNF264 Zfp264  19:62384680-62432350  (19q13.4)  Imprinted Maternal
Mus musculus Zfp127as ZNF127AS  --- (7 29.0 cM)  Imprinted Maternal
Mus musculus Zfp264   --- (7 7.0 cM)  Imprinted Paternal
Mus musculus Zim1   7:6269528-6310517 AS (7 6.5 cM)  Imprinted Maternal
Mus musculus Zim2 1700116N21Rik  7:6245833-6276491 AS (7 A1)  Imprinted Maternal
Mus musculus Zim3 1700128I23Rik  --- (7 7.0 cM)  Imprinted Maternal