Imprinted Gene Databases

Imprinted Genes: by Species

Below are listings of genes by species, sorted by chromosomal location. Gene information has been gathered from NCBI, and some genes lack chromosomal coordinates; these are designated with ---. To switch species, select the appropriate tab. To view more information about a gene, click on its name. If there is a gene missing that you feel should be included in the catalog, please contact us.

Only display genes with imprint status:
Gene Aliases Location Status Expressed Allele
Znf264     Imprinted Paternal
Gpr1   1 AS  Imprinted Paternal
Zdbf2 4930431J08Rik, 9330107J05Rik, RP23-434D24.2  Imprinted Paternal
Mcts2 PSIMCT-1, RP23-35I8.12, 2400002F11Rik  Imprinted Paternal
Mir298 Mirn298, mmu-mir-298  2 AS  Imprinted Paternal
Mir296 Mirn296, mmu-mir-296  2 AS  Imprinted Paternal
Sfmbt2 D2Wsu23e, D330030P06Rik  2 6.0 cM  Imprinted Paternal
Wt1 Wt-1, D630046I19Rik  2 58.0 cM  Unknown Unknown
Gatm AT, AI314789, 1810003P21Rik  2 69.0 cM AS  Imprinted Maternal
H13 Spp, H-13, Hm13, PSL3, AV020344, 1200006O09Rik, 4930443L17Rik, 5031424B04Rik  2 86.0 cM  Imprinted Maternal
Nnat Peg5, AW107673, 5730414I02Rik  2 88.0 cM  Imprinted Paternal
Blcap Bc10, AI462828, MGC102074  2 88.0 cM AS  Imprinted Isoform Dependent
Gnas P1, P2, P3, GSP, Gsa, POH, GPSA, Nesp, Gnas1, Nespl, PHP1A, PHP1B, Gnasxl, Nesp55, Oedsml, Oed-Sml, Gs-alpha, XLalphas, MGC118029, 5530400H20Rik, A930027G11Rik, C130027O20Rik  2 104.0 cM  Imprinted Isoform Dependent
Nespas Gnas-as  2 104.0 cM AS  Imprinted Paternal
L3mbtl L3MBTL1, KIAA0681, mKIAA0681, C630004G01  2 H2  Not Imprinted Biallelic
Ngfb   3 48.5 cM  Predicted Paternal
Gnai3 Gnai-3, AI158965, AW537698  3 48.8 cM AS  Predicted Maternal
Lin28a Lin28, Tex17, Lin-28, Gm10299, lin-28A, AL024421, ENSMUSG00000070700  4 AS  Imprinted
Trp73 p73, TP73  4 82.0 cM AS  Unknown Unknown
Magi2 AIP-1, Acvri1, Magi-2, S-SCAM, Acvrip1, Acvrinp1, mKIAA0705  Imprinted Paternal
Il6 Il-6  5 17.0 cM  Imprinted
Mkrn1-ps1 makorin, ring finger protein 1, pseudogene 1  5 E1 AS  Imprinted Paternal
Mir335 Mirn335, mir-335, mmu-mir-335  Imprinted
Pon1 Pon  6 0.5 cM AS  Not Imprinted Biallelic
Pon3 AI786302, 2810004E20  6 0.5 cM AS  Provisional Data Maternal
Ppp1r9a BB181831, mKIAA1222, 5330407E15, neurabin-I, 2810430P21Rik, 4930518N04Rik, A230094E16Rik  6 0.5 cM  Imprinted Maternal
Peg10 Edr, HB-1, Mar2, MEF3L, Mart2, MyEF-3, AA407948  6 0.5 cM  Imprinted Paternal
Asb4 AV117194, AW060255, 8430401O13Rik  6 0.6 cM  Imprinted Maternal
Sgce e-SG  6 1.0 cM AS  Imprinted Paternal
Tfpi2 AV000670, PP5/TFPI-2  6 1.0 cM AS  Imprinted Maternal
Dlx5 AI385752  6 2.0 cM AS  Not Imprinted Biallelic
Calcr Clr  6 3.8 cM AS  Imprinted Maternal
Mest Peg1, AA408879, AI256745  6 7.5 cM  Imprinted Paternal
Pon2 AI481612, MGC68232, 6330405I24Rik  6 A1 AS  Provisional Data Maternal
Copg2 AW227625  6 A3.3 AS  Imprinted Maternal
Cpa4 AV009555, 1110019K20Rik  6 A3.3  Unknown Unknown
Klf14 BTEB5, AL022736, 5330411L03Rik  6 A3.3 AS  Imprinted Maternal
Nap1l5 1110020M21Rik  6 C1 AS  Imprinted Paternal
Dhcr7 AA409147  Imprinted Maternal
Ano1 Tmem16a  7 AS  Imprinted Maternal
LOC101055709   Imprinted
Zim1   7 6.5 cM AS  Imprinted Maternal
Usp29 Ocat  7 6.5 cM  Imprinted Paternal
Peg3 Pw1, End4, Gcap4, Zfp102, AL022617, mKIAA0287  7 6.5 cM AS  Imprinted Paternal
Zfp264   7 7.0 cM  Imprinted Paternal
Zim3 1700128I23Rik  7 7.0 cM  Imprinted Maternal
Ndn Peg6, AI528698  7 28.0 cM  Imprinted Paternal
Peg12 Frat3  7 28.0 cM AS  Imprinted Paternal
Magel2 ns7, nM15, NDNL1, Mage-l2  7 28.0 cM  Imprinted Paternal
Gabrg3 Gabrg-3  7 28.2 cM AS  Unknown Unknown
Gabra5 A230018I05Rik  7 28.5 cM AS  Unknown Unknown
Gabrb3 Cp1, Gabrb-3, AW049585, A230092K12Rik  7 28.6 cM  Unknown Unknown
Ube3a Hpve6a, KIAA4216, mKIAA4216, 4732496B02, 5830462N02Rik, A130086L21Rik  7 28.65 cM  Imprinted Maternal
Pwcr1 snoRNA MBII-85  7 29.0 cM AS  Imprinted Paternal
Snrpn SMN, Peg4, HCERN3, MGC18604, MGC30325, 2410045I01Rik  7 29.0 cM AS  Imprinted Paternal
Mkrn3 Zfp127, D7H15S9-1  7 29.0 cM AS  Imprinted Paternal
Zfp127as ZNF127AS  7 29.0 cM  Imprinted Maternal
Ampd3   7 52.0 cM  Imprinted Maternal
Tspan32 Art-1, Phemx, Tssc6, AW208513, BB235973, D7Wsu37e  7 69.0 cM  Not Imprinted Biallelic
H19 AI747191  7 69.03 cM AS  Imprinted Maternal
Igf2as   7 69.09 cM  Imprinted Paternal
Igf2 Mpr, M6pr, Peg2, Igf-2, Igf-II, AL033362  7 69.09 cM AS  Imprinted Paternal
Ins2 Mody, Ins-2, Mody4, AA986540, proinsulin, INS  7 69.1 cM AS  Imprinted Paternal
Th   7 69.2 cM AS  Imprinted Maternal
Kcnq1ot1 Lit1, Kvlqt1-as, antisense transcript of Kvlqt1  7 69.3 cM  Imprinted Paternal
Ascl2 Mash2, 2410083I15Rik  7 69.3 cM AS  Imprinted Maternal
Tssc4 AA241958, ESTM671070  7 69.3 cM  Imprinted Maternal
Cd81 Tapa1, Tapa-1, Tspan28  7 69.3 cM  Imprinted Maternal
Kcnq1 Kcna9, KVLQT1, AW559127  7 69.3 cM  Imprinted Maternal
Phlda2 Ipl, Tssc3  7 69.5 cM AS  Imprinted Maternal
Slc22a18 HET, ITM, BWR1A, Impt1, TSSC5, Orctl2, BWSCR1A, AW260131, Slc22a1l, p45-BWR1A  7 69.5 cM  Imprinted Maternal
AF313042 Msuit1  7 69.5 cM  Imprinted Maternal
Cdkn1c CDKI, Kip2, p57Kip2, AL024410, p57(kip2)  7 69.49 cM AS  Imprinted Maternal
Nap1l4 Nap2, AI316776, D7Wsu30e, 2810410H14Rik  7 69.55 cM AS  Imprinted Maternal
Tnfrsf23 mSOB, Tnfrh1, Dctrailr1, MGC123882, MGC123883, Tnfrsf1al1, mDcTrailr1  7 69.56 cM AS  Imprinted Maternal
AK155734   7 69.57 cM  Imprinted Maternal
Tnfrsf22 SOBa, Tnfrh2, Tnfrsf1al2, mDcTrailr2, 2810028K06Rik, C130035G06Rik  7 69.57 cM AS  Imprinted Maternal
Tnfrsf26 Tnfrh3, Tnfrsf24  7 69.58 cM AS  Imprinted Maternal
Osbpl5 ORP5, Obph1, Osbp2, AI462538, 1110006M06Rik  7 69.59 cM AS  Conflicting Data Unknown
Nctc1 Rhit1, 9530074L01  7 87.96 cM AS  Imprinted Paternal
Zim2 1700116N21Rik  7 A1 AS  Imprinted Maternal
Snurf Snrpn, MGC18604, MGC30325, 2410045I01Rik  7 B5 AS  Imprinted Paternal
Atp10a pfatp, Atp10c  7 B5  Conflicting Data Maternal
Inpp5f V2 SAC2, cI-27, AI115354, AW561896, mKIAA0966, 5830435P03Rik  7 F3  Imprinted Paternal
Trpm5 Mtr1, Ltrpc5, 9430099A16Rik  7 F5 AS  Not Imprinted Biallelic
Gab1 AA408973, AW107238  8 AS  Imprinted Paternal
Mir184 Mirn184, mmu-mir-184  9 AS  Imprinted Paternal
Ntm Hnt, Igdcc2, R75390, 6230410L23Rik, B230210G24Rik  9 AS  Imprinted
Zc3h12c mKIAA1726, A230108E06, C230027N18Rik  9 AS  Not Imprinted Biallelic
Musd2 pro  Imprinted
Rasgrf1 Grf1, p190, CDC25, P190-A, CDC25Mm, Grfbeta, Ras-GRF1, p190RhoGEF  9 50.0 cM  Imprinted Paternal
Sdhd C78570, AVLL5809, PRO19626, 3110001M13Rik  9 B AS  Unknown Unknown
Hymai   10  Imprinted Paternal
Lin28b Lin-28.2, 2810403D23Rik, D030047M17Rik  10 AS  Not Imprinted Biallelic
Plagl1 Lot1, Zac1  10 15.0 cM  Imprinted Paternal
Dcn DC, PG40, PGII, PGS2, mDcn, DSPG2, SLRR1B  10 55.0 cM  Imprinted Maternal
Ctnna3 Vr22, Catna3, 4933408A16  10 B4-B5.1  Unknown Unknown
Ccdc40 RP23-13O17.4, B930008I02Rik  11  Imprinted
Ddc Aadc  11 7.0 cM AS  Imprinted Paternal
Grb10 Meg1, AI325020, mKIAA0207, 5730571D09Rik  11 8.0 cM AS  Imprinted Isoform Dependent
U2af1-rs1 SP2, 35kDa, Irlgs2, D11Ncvs75, U2afbp-rs  11 12.0 cM  Imprinted Paternal
Commd1 Murr1, U2/Mu, AI256843  11 12.0 cM AS  Imprinted Maternal
Zrsr1 SP2, Irlgs2, D11Ncvs75, U2af1-rs1, U2afbp-rs  11 12.0 cM  Imprinted Paternal
AF357355 MBII-343  12  Imprinted Maternal
Mir337 Mirn337, mmu-mir-337  12  Imprinted Maternal
AF357359 MBII-426  12  Imprinted Maternal
Mir370 Mirn370, mmu-mir-370  12  Imprinted Maternal
Mir376b Mirn376b  12  Imprinted Maternal
Mir154 Mirn154, mmu-mir-154  12  Imprinted Maternal
Mir136 Mirn136, mmu-mir-136  12  Imprinted Maternal
B830012L14Rik   12  Imprinted Maternal
Mir134 Mirn134, mmu-mir-134  12  Imprinted Maternal
Mir380 Mirn380, mmu-mir-380  12  Imprinted Maternal
Mir127 Mirn127, mmu-mir-127  12  Imprinted Maternal
Mir431 Mirn431, mmu-mir-431  12  Imprinted Maternal
Mir411 Mirn411, mmu-mir-411  12  Imprinted Maternal
Mir410 Mirn410, mmu-mir-410  12  Imprinted Maternal
Dlk1 FA1, ZOG, pG2, Peg9, SCP1, Ly107, pref-1, AW742678  12 54.0 cM  Imprinted Paternal
Gtl2 Meg3, R74756, R75394, AI425946, AW108224, D12Bwg1266e, 2900016C05Rik, 3110050O07Rik, 6330408G06Rik  12 54.0 cM  Imprinted Maternal
AF357426 MBII-49  12 54.5 cM  Imprinted Maternal
AF357341 MBII-19  12 54.5 cM  Imprinted Maternal
AF357425 MBII-48  12 54.5 cM  Imprinted Maternal
AF357428 MBII-78  12 54.5 cM  Imprinted Maternal
Rian Meg8, 5530401N18Rik, C130089L09Rik  12 60.41 cM  Imprinted Maternal
Mirg Meg9, AI852992, 2810474H01Rik  12 F1  Imprinted Maternal
Rtl1 Mar, Mor1, Mart1, 6430411K18Rik  12 F1 AS  Imprinted Paternal
Dio3 MGC124117, MGC124118  12 F1  Imprinted Paternal
Begain Gm897, BM948371  12 F1 AS  Imprinted Isoform Dependent
Rb1 Rb, pRb, Rb-1  14 41.0 cM AS  Not Imprinted Biallelic
Htr2a Htr2, Htr-2, MGC124301, MGC124302, E030013E04  14 41.5 cM  Imprinted Maternal
Zfat Gm922, Zfat1, Zfp406  15 AS  Not Imprinted Biallelic
Kcnk9 Task3  15 D3 AS  Imprinted Maternal
Peg13   15 D3 AS  Imprinted Paternal
Slc38a4 Ata3, mATA3, 1110012E16Rik, 1700012A18Rik  15 F1 AS  Imprinted Paternal
Slc22a3 EMT, Oct3, Orct3, Slca22a3  17 7.31 cM AS  Imprinted Maternal
Slc22a2 Oct2, Orct2, MGC18339  17 7.32 cM  Imprinted Maternal
Igf2r CD222, CI-MPR, Mpr300, AI661837, M6P/IGF2R  17 7.35 cM AS  Imprinted Maternal
Air B930018I07Rik  17 7.36 cM  Imprinted Paternal
Impact E430016J11Rik  18 A2-B2  Imprinted Paternal
Glis3 E230012L24, 4833409N03Rik, E330013K21Rik  19 AS  Not Imprinted Biallelic
Ins1 Ins-1, Ins2-rs1  19 49.0 cM  Conflicting Data Paternal
Rhox5 Pem, AA409564  X 12.7 cM  Imprinted Isoform Dependent
Tsix antisense of Xist  X 42.0 cM  Imprinted Maternal
Jpx Enox, 2010000I03Rik, 2510040I06Rik  X 46.17 cM  Imprinted Paternal
Ftx Thcytx, BB219131, NCRNA00182, B230206F22Rik  X 46.21 cM AS  Imprinted Paternal
Zcchc13 Cnbp2, 4930513O09Rik  X 46.26 cM  Imprinted Maternal
Xist A430022B11  X D AS  Imprinted Paternal